Not at all to be honest, there are a few occasions in which two or more cts give different orders, but it doesn't get to such a point that it gets chaotic. Usually one set of orders gets followed over the other, and that's that.
On a side note, it may seem that since the server is different from most JB server rules that players would stray away from it, but honestly it attracts players just fine. Though I do agree, a lack of player base is majorly due to the fact that the server hasn't shifted to CS:GO. I'm glad to hear that the new server looks good, and we'll get to see some more players on as well.